My problem is this: I have both the debug and regular rom of OoT Master Quest. However when I save the changes ZAP2 makes from the debug rom into the normal rom, they never work (when it is from debug to debug it works fine). I think this may have to do with hex addressing...? I get a RAMBase error when I try to use the standard rom as my template for changes. this is an issue because I want to make changes and play the game normally from a standar rom. Utility of time will let me make changes but I cant find a list of hex address for zmap and zscenes for master quest. This means my extracted files have little meaning as I dont know which ones are which. Anyone know where to find this info or pointers? I hope someone out there is verse on these tools. Thanks in advance!

EDIT:
Excellent, thank you for the help Wareya! After an extensive google I cannot find anywhere about how to decompress the entire n64 rom. I can extract images and such but I need the entire rom uncompressed so I can inject code into it. Anybody know how?